A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2018-03-20, 16:49 based on data in:
/home/classadmin/class/QC/multiQC
General Statistics
Showing 2/2 rows and 1/1 columns.Sample Name | M Reads Mapped |
---|---|
SNF2_1 | flagstat | 10.8 |
WT_1 | flagstat | 1.2 |
RSeQC
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput RNA-seq data.
Read Distribution
Read Distribution calculates how mapped reads are distributed over genome features.
Gene Body Coverage
Gene Body Coverage calculates read coverage over gene bodies. This is used to check if reads coverage is uniform and if there is any 5' or 3' bias.
Bam Stat
All numbers reported in millions.
Samtools
Samtools is a suite of programs for interacting with high-throughput sequencing data.
Samtools Flagstat
This module parses the output from samtools flagstat
. All numbers in millions.